mtdh protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000017694	abcf1	ENSAOCP00000017694	ENSAOCP00000022826	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	ATP-binding cassette, sub-family F (GCN20), member 1.	0.705
ENSAOCP00000017694	mtdh	ENSAOCP00000017694	ENSAOCP00000006909	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Uncharacterized protein.	0.549
ENSAOCP00000017694	ndufa12	ENSAOCP00000017694	ENSAOCP00000011037	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.705
ENSAOCP00000017694	snd1	ENSAOCP00000017694	ENSAOCP00000026100	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.495
LOC111569890	LOC111582511	ENSAOCP00000012700	ENSAOCP00000004064	CREB binding protein a.	CREB binding protein b.	0.901
LOC111569890	mtdh	ENSAOCP00000012700	ENSAOCP00000006909	CREB binding protein a.	Uncharacterized protein.	0.523
LOC111582511	LOC111569890	ENSAOCP00000004064	ENSAOCP00000012700	CREB binding protein b.	CREB binding protein a.	0.901
LOC111582511	mtdh	ENSAOCP00000004064	ENSAOCP00000006909	CREB binding protein b.	Uncharacterized protein.	0.523
abcf1	ENSAOCP00000017694	ENSAOCP00000022826	ENSAOCP00000017694	ATP-binding cassette, sub-family F (GCN20), member 1.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.705
abcf1	mtdh	ENSAOCP00000022826	ENSAOCP00000006909	ATP-binding cassette, sub-family F (GCN20), member 1.	Uncharacterized protein.	0.612
abcf1	ndufa12	ENSAOCP00000022826	ENSAOCP00000011037	ATP-binding cassette, sub-family F (GCN20), member 1.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.713
abcf1	rpl4	ENSAOCP00000022826	ENSAOCP00000017485	ATP-binding cassette, sub-family F (GCN20), member 1.	Ribosomal protein L4.	0.529
abcf1	snd1	ENSAOCP00000022826	ENSAOCP00000026100	ATP-binding cassette, sub-family F (GCN20), member 1.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.550
dpyd	mtdh	ENSAOCP00000011473	ENSAOCP00000006909	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.	Uncharacterized protein.	0.512
dpyd	snd1	ENSAOCP00000011473	ENSAOCP00000026100	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.417
ints1	mtdh	ENSAOCP00000004286	ENSAOCP00000006909	Integrator complex subunit 1.	Uncharacterized protein.	0.490
mtdh	ENSAOCP00000017694	ENSAOCP00000006909	ENSAOCP00000017694	Uncharacterized protein.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.549
mtdh	LOC111569890	ENSAOCP00000006909	ENSAOCP00000012700	Uncharacterized protein.	CREB binding protein a.	0.523
mtdh	LOC111582511	ENSAOCP00000006909	ENSAOCP00000004064	Uncharacterized protein.	CREB binding protein b.	0.523
mtdh	abcf1	ENSAOCP00000006909	ENSAOCP00000022826	Uncharacterized protein.	ATP-binding cassette, sub-family F (GCN20), member 1.	0.612