Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
patz1POZ/BTB and AT hook containing zinc finger 1. (653 aa)    
Predicted Functional Partners:
LOC111567764
AT hook, DNA binding motif, containing 1.
      
 0.548
rcor2
REST corepressor 2.
   
 0.488
rnf4
Ring finger protein 4.
    
 
 0.446
mrpl48
Mitochondrial ribosomal protein L48.
    
 
 0.446
mysm1
Myb-like, SWIRM and MPN domains 1.
    
  0.436
nisch
Nischarin.
      
 0.435
LOC111588582
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.434
LOC111577903
Metastasis associated 1 family, member 3.
   
 0.420
pagr1
PAXIP1 associated glutamate-rich protein 1.
     
 0.420
plp2
Proteolipid protein 2.
      
 0.407
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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