STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111570548Si:ch211-250n8.1. (419 aa)    
Predicted Functional Partners:
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
    
 0.595
ift172
Intraflagellar transport 172.
    
 0.588
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
    
 0.586
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 0.578
ift88
Intraflagellar transport 88 homolog.
    
 0.551
cluap1
Clusterin associated protein 1.
    
 0.534
ift81
Intraflagellar transport 81 homolog.
    
 0.522
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.511
prkci
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 0.504
LOC111572559
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 0.504
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.