Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111574642Rh blood group, D antigen; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily. (418 aa)    
Predicted Functional Partners:
tmem50a
Transmembrane protein 50A.
      
 0.777
LOC111578476
Arginine/serine-rich protein 1.
      
 0.617
rsrp1
Arginine/serine-rich protein 1.
      
 0.617
LOC111579072
Macoilin 1a.
      
 0.615
maco1
Macoilin 1b.
      
 0.615
LOC111564293
Kell metallo-endopeptidase (Kell blood group).
   
  
 0.611
pir
Pirin; Belongs to the pirin family.
    
 
 0.596
LOC111568627
Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.571
LOC111568625
Aquaporin 1a (Colton blood group), tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.571
LOC111573967
GATA binding protein 1a.
   
  
 0.569
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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