Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prrg4Proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane). (213 aa)    
Predicted Functional Partners:
yap1
Yes-associated protein 1.
    
   0.774
nedd4
NEDD4 E3 ubiquitin protein ligase a.
    
 
 0.682
nedd4l
NEDD4 like E3 ubiquitin protein ligase.
    
 
 0.682
cep41
Centrosomal protein 41.
      
 0.614
taf2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
      
 0.613
qser1
Glutamine and serine rich 1.
      
 0.612
TMEM74
Transmembrane protein 74.
      
 0.612
sdr16c5
Short chain dehydrogenase/reductase family 16C, member 5a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.612
rab3gap2
RAB3 GTPase activating protein subunit 2 (non-catalytic).
      
 0.515
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
      
 0.505
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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