LOC111578795 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111578795

RAB6B, member RAS oncogene family. (208 aa)

Predicted Functional Partners:

RIC1

0.853

vps39

0.800

GCC2

0.792

vps52

0.780

vps53

0.774

cog6

0.758

LOC111562415

0.752

GDI2

0.752

LOC111568120

0.752

LOC111579285

0.752

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCC2	LOC111578795	ENSAOCP00000022620	ENSAOCP00000007345	GRIP domain-containing protein.	RAB6B, member RAS oncogene family.	0.792
GCC2	RIC1	ENSAOCP00000022620	ENSAOCP00000001826	GRIP domain-containing protein.	RIC1 homolog, RAB6A GEF complex partner 1.	0.589
GCC2	cog6	ENSAOCP00000022620	ENSAOCP00000025383	GRIP domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.621
GCC2	vps52	ENSAOCP00000022620	ENSAOCP00000031613	GRIP domain-containing protein.	VPS52 subunit of GARP complex.	0.694
GCC2	vps53	ENSAOCP00000022620	ENSAOCP00000003870	GRIP domain-containing protein.	VPS53 subunit of GARP complex.	0.817
GDI2	LOC111578795	ENSAOCP00000010748	ENSAOCP00000007345	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB6B, member RAS oncogene family.	0.752
GDI2	RIC1	ENSAOCP00000010748	ENSAOCP00000001826	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RIC1 homolog, RAB6A GEF complex partner 1.	0.585
LOC111562415	LOC111578795	ENSAOCP00000009231	ENSAOCP00000007345	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB6B, member RAS oncogene family.	0.752
LOC111562415	RIC1	ENSAOCP00000009231	ENSAOCP00000001826	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RIC1 homolog, RAB6A GEF complex partner 1.	0.585
LOC111568120	LOC111578795	ENSAOCP00000010882	ENSAOCP00000007345	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB6B, member RAS oncogene family.	0.752
LOC111568120	RIC1	ENSAOCP00000010882	ENSAOCP00000001826	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RIC1 homolog, RAB6A GEF complex partner 1.	0.585
LOC111578795	GCC2	ENSAOCP00000007345	ENSAOCP00000022620	RAB6B, member RAS oncogene family.	GRIP domain-containing protein.	0.792
LOC111578795	GDI2	ENSAOCP00000007345	ENSAOCP00000010748	RAB6B, member RAS oncogene family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.752
LOC111578795	LOC111562415	ENSAOCP00000007345	ENSAOCP00000009231	RAB6B, member RAS oncogene family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.752
LOC111578795	LOC111568120	ENSAOCP00000007345	ENSAOCP00000010882	RAB6B, member RAS oncogene family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.752
LOC111578795	LOC111579285	ENSAOCP00000007345	ENSAOCP00000012602	RAB6B, member RAS oncogene family.	Rab GDP dissociation inhibitor beta-like.	0.752
LOC111578795	RIC1	ENSAOCP00000007345	ENSAOCP00000001826	RAB6B, member RAS oncogene family.	RIC1 homolog, RAB6A GEF complex partner 1.	0.853
LOC111578795	cog6	ENSAOCP00000007345	ENSAOCP00000025383	RAB6B, member RAS oncogene family.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.758
LOC111578795	vps39	ENSAOCP00000007345	ENSAOCP00000022640	RAB6B, member RAS oncogene family.	VPS39 subunit of HOPS complex.	0.800
LOC111578795	vps52	ENSAOCP00000007345	ENSAOCP00000031613	RAB6B, member RAS oncogene family.	VPS52 subunit of GARP complex.	0.780