Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ppp1r42Protein phosphatase 1, regulatory subunit 42. (302 aa)    
Predicted Functional Partners:
COPS6
COP9 signalosome subunit 6.
   
 0.965
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
   
 0.965
cops2
COP9 signalosome subunit 2.
   
 0.961
cops3
COP9 signalosome subunit 3.
   
 0.951
cops8
COP9 signalosome subunit 8.
   
 0.949
LOC111569476
COP9 constitutive photomorphogenic homolog subunit 7A.
   
 0.944
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.936
ddb1
Damage-specific DNA binding protein 1.
    
 0.907
psmd12
Proteasome 26S subunit, non-ATPase 12.
   
 0.894
eloc
Elongin C paralog a; Belongs to the SKP1 family.
   
 0.855
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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