STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111584948Laminin, beta 1a. (1768 aa)    
Predicted Functional Partners:
cd44
Link domain-containing protein.
     
 0.906
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
    
 0.745
LOC111581516
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
    
 0.745
LOC111581104
Dystroglycan 1.
    
 0.727
LOC111586673
Peptidase S72 domain-containing protein.
    
 0.727
itgb4
Integrin beta.
    
 0.725
ITGA7
Integrin subunit alpha 7; Belongs to the integrin alpha chain family.
    
 0.723
LOC111581177
Integrin, alpha 6, like; Belongs to the integrin alpha chain family.
    
 0.723
itga6
Integrin, alpha 6a; Belongs to the integrin alpha chain family.
    
 0.723
LOC111576800
Integrin, alpha 6b; Belongs to the integrin alpha chain family.
    
 0.723
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.