Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rhbdd3Rhomboid domain containing 3. (361 aa)    
Predicted Functional Partners:
bloc1s3
Biogenesis of lysosome-related organelles complex 1 subunit 3; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO). Belongs to the BLOC1S3 family.
      
 0.749
pibf1
Progesterone immunomodulatory binding factor 1.
      
 0.717
pld6
Phospholipase D family, member 6.
   
  
 0.702
dnajc18
DnaJ (Hsp40) homolog, subfamily C, member 18.
      
 0.617
rhbdd2
Rhomboid domain containing 2.
      
 0.616
gas2l1
Growth arrest-specific 2 like 1.
    
 
 0.613
rasl10a
RAS-like, family 10, member A.
      
 0.613
zmat5
Zinc finger, matrin-type 5.
      
 0.613
ubac2
UBA domain containing 2.
      
 0.592
fam118b
Family with sequence similarity 118 member B.
    
 
 0.577
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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