capns1 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

capns1

Calpain, small subunit 1 b. (216 aa)

Predicted Functional Partners:

ENSAOCP00000003814

0.916

capn7

0.794

ENSAOCP00000032451

0.794

LOC111563039

0.735

CAPN6

0.735

ENSAOCP00000003165

0.720

LOC111580017

0.714

ENSAOCP00000006064

0.696

LOC111564147

0.696

LOC111588190

0.688

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAPN6	ENSAOCP00000003814	ENSAOCP00000023817	ENSAOCP00000003814	Calpain 6; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.704
CAPN6	LOC111588190	ENSAOCP00000023817	ENSAOCP00000007188	Calpain 6; Belongs to the peptidase C2 family.	Calpain 15; Belongs to the peptidase C2 family.	0.575
CAPN6	capns1	ENSAOCP00000023817	ENSAOCP00000007482	Calpain 6; Belongs to the peptidase C2 family.	Calpain, small subunit 1 b.	0.735
ENSAOCP00000003165	ENSAOCP00000003814	ENSAOCP00000003165	ENSAOCP00000003814	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.774
ENSAOCP00000003165	capns1	ENSAOCP00000003165	ENSAOCP00000007482	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Calpain, small subunit 1 b.	0.720
ENSAOCP00000003814	CAPN6	ENSAOCP00000003814	ENSAOCP00000023817	Uncharacterized protein.	Calpain 6; Belongs to the peptidase C2 family.	0.704
ENSAOCP00000003814	ENSAOCP00000003165	ENSAOCP00000003814	ENSAOCP00000003165	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.774
ENSAOCP00000003814	ENSAOCP00000006064	ENSAOCP00000003814	ENSAOCP00000006064	Uncharacterized protein.	Uncharacterized protein.	0.677
ENSAOCP00000003814	ENSAOCP00000032451	ENSAOCP00000003814	ENSAOCP00000032451	Uncharacterized protein.	Uncharacterized protein.	0.661
ENSAOCP00000003814	LOC111563039	ENSAOCP00000003814	ENSAOCP00000004312	Uncharacterized protein.	Calpain 5a; Belongs to the peptidase C2 family.	0.699
ENSAOCP00000003814	LOC111564147	ENSAOCP00000003814	ENSAOCP00000026180	Uncharacterized protein.	Calpain 5b; Belongs to the peptidase C2 family.	0.677
ENSAOCP00000003814	LOC111580017	ENSAOCP00000003814	ENSAOCP00000021989	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.689
ENSAOCP00000003814	LOC111588190	ENSAOCP00000003814	ENSAOCP00000007188	Uncharacterized protein.	Calpain 15; Belongs to the peptidase C2 family.	0.754
ENSAOCP00000003814	capn7	ENSAOCP00000003814	ENSAOCP00000021473	Uncharacterized protein.	Calpain 7; Belongs to the peptidase C2 family.	0.661
ENSAOCP00000003814	capns1	ENSAOCP00000003814	ENSAOCP00000007482	Uncharacterized protein.	Calpain, small subunit 1 b.	0.916
ENSAOCP00000006064	ENSAOCP00000003814	ENSAOCP00000006064	ENSAOCP00000003814	Uncharacterized protein.	Uncharacterized protein.	0.677
ENSAOCP00000006064	LOC111588190	ENSAOCP00000006064	ENSAOCP00000007188	Uncharacterized protein.	Calpain 15; Belongs to the peptidase C2 family.	0.401
ENSAOCP00000006064	capns1	ENSAOCP00000006064	ENSAOCP00000007482	Uncharacterized protein.	Calpain, small subunit 1 b.	0.696
ENSAOCP00000032451	ENSAOCP00000003814	ENSAOCP00000032451	ENSAOCP00000003814	Uncharacterized protein.	Uncharacterized protein.	0.661
ENSAOCP00000032451	capns1	ENSAOCP00000032451	ENSAOCP00000007482	Uncharacterized protein.	Calpain, small subunit 1 b.	0.794