cpeb2 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cpeb2

Cytoplasmic polyadenylation element binding protein 2. (768 aa)

Predicted Functional Partners:

PLK1

0.912

cdk1

0.905

ccnb2

0.904

cisd3

0.585

sympk

0.518

tent2

0.502

fmr1

0.448

mos

0.425

trip12

0.422

RPL27A

0.416

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PLK1	ccnb2	ENSAOCP00000031266	ENSAOCP00000000924	Serine/threonine-protein kinase PLK.	Cyclin B2; Belongs to the cyclin family.	0.981
PLK1	cdk1	ENSAOCP00000031266	ENSAOCP00000007405	Serine/threonine-protein kinase PLK.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.972
PLK1	cpeb2	ENSAOCP00000031266	ENSAOCP00000010463	Serine/threonine-protein kinase PLK.	Cytoplasmic polyadenylation element binding protein 2.	0.912
PLK1	trip12	ENSAOCP00000031266	ENSAOCP00000023506	Serine/threonine-protein kinase PLK.	Thyroid hormone receptor interactor 12.	0.503
RPL27A	cisd3	ENSAOCP00000012929	ENSAOCP00000029419	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Uncharacterized protein.	0.728
RPL27A	cpeb2	ENSAOCP00000012929	ENSAOCP00000010463	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Cytoplasmic polyadenylation element binding protein 2.	0.416
ccnb2	PLK1	ENSAOCP00000000924	ENSAOCP00000031266	Cyclin B2; Belongs to the cyclin family.	Serine/threonine-protein kinase PLK.	0.981
ccnb2	cdk1	ENSAOCP00000000924	ENSAOCP00000007405	Cyclin B2; Belongs to the cyclin family.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.993
ccnb2	cpeb2	ENSAOCP00000000924	ENSAOCP00000010463	Cyclin B2; Belongs to the cyclin family.	Cytoplasmic polyadenylation element binding protein 2.	0.904
cdk1	PLK1	ENSAOCP00000007405	ENSAOCP00000031266	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	Serine/threonine-protein kinase PLK.	0.972
cdk1	ccnb2	ENSAOCP00000007405	ENSAOCP00000000924	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	Cyclin B2; Belongs to the cyclin family.	0.993
cdk1	cpeb2	ENSAOCP00000007405	ENSAOCP00000010463	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	Cytoplasmic polyadenylation element binding protein 2.	0.905
cisd3	RPL27A	ENSAOCP00000029419	ENSAOCP00000012929	Uncharacterized protein.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.728
cisd3	cpeb2	ENSAOCP00000029419	ENSAOCP00000010463	Uncharacterized protein.	Cytoplasmic polyadenylation element binding protein 2.	0.585
cpeb2	PLK1	ENSAOCP00000010463	ENSAOCP00000031266	Cytoplasmic polyadenylation element binding protein 2.	Serine/threonine-protein kinase PLK.	0.912
cpeb2	RPL27A	ENSAOCP00000010463	ENSAOCP00000012929	Cytoplasmic polyadenylation element binding protein 2.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.416
cpeb2	ccnb2	ENSAOCP00000010463	ENSAOCP00000000924	Cytoplasmic polyadenylation element binding protein 2.	Cyclin B2; Belongs to the cyclin family.	0.904
cpeb2	cdk1	ENSAOCP00000010463	ENSAOCP00000007405	Cytoplasmic polyadenylation element binding protein 2.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.905
cpeb2	cisd3	ENSAOCP00000010463	ENSAOCP00000029419	Cytoplasmic polyadenylation element binding protein 2.	Uncharacterized protein.	0.585
cpeb2	fmr1	ENSAOCP00000010463	ENSAOCP00000004219	Cytoplasmic polyadenylation element binding protein 2.	Fragile X mental retardation 1.	0.448