STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111569265Uncharacterized protein. (789 aa)    
Predicted Functional Partners:
plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
     
 0.652
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
     
 0.652
LOC111574437
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
     
 0.652
spo11
SPO11 initiator of meiotic double stranded breaks.
     
 0.631
LOC111573979
CXXC finger protein 1b.
     
 0.551
LOC111585599
CXXC finger protein 1a.
     
 0.551
rai1
Retinoic acid induced 1.
  
 0.547
med8
Mediator of RNA polymerase II transcription subunit 8; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
      
 0.544
SH3RF3
SH3 domain containing ring finger 3.
   
 0.540
ccdc36
Uncharacterized protein.
      
 0.501
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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