Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
dkc1 | fbl | ENSAOCP00000009068 | ENSAOCP00000022998 | Dyskeratosis congenita 1, dyskerin. | Fibrillarin. | 0.998 |
dkc1 | gar1 | ENSAOCP00000009068 | ENSAOCP00000016080 | Dyskeratosis congenita 1, dyskerin. | H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. | 0.999 |
dkc1 | mrto4 | ENSAOCP00000009068 | ENSAOCP00000003216 | Dyskeratosis congenita 1, dyskerin. | Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. | 0.879 |
dkc1 | nhp2 | ENSAOCP00000009068 | ENSAOCP00000011932 | Dyskeratosis congenita 1, dyskerin. | Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. | 0.999 |
dkc1 | nop10 | ENSAOCP00000009068 | ENSAOCP00000027889 | Dyskeratosis congenita 1, dyskerin. | NOP10 ribonucleoprotein homolog (yeast). | 0.999 |
dkc1 | nop56 | ENSAOCP00000009068 | ENSAOCP00000004021 | Dyskeratosis congenita 1, dyskerin. | Uncharacterized protein. | 0.984 |
dkc1 | nop58 | ENSAOCP00000009068 | ENSAOCP00000011453 | Dyskeratosis congenita 1, dyskerin. | NOP58 ribonucleoprotein homolog (yeast). | 0.995 |
dkc1 | trub1 | ENSAOCP00000009068 | ENSAOCP00000012665 | Dyskeratosis congenita 1, dyskerin. | TruB pseudouridine (psi) synthase family member 1. | 0.566 |
dkc1 | wrap53 | ENSAOCP00000009068 | ENSAOCP00000030412 | Dyskeratosis congenita 1, dyskerin. | WD repeat containing, antisense to TP53. | 0.990 |
fau | fbl | ENSAOCP00000006577 | ENSAOCP00000022998 | 40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. | Fibrillarin. | 0.910 |
fau | mrto4 | ENSAOCP00000006577 | ENSAOCP00000003216 | 40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. | Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. | 0.999 |
fau | nhp2 | ENSAOCP00000006577 | ENSAOCP00000011932 | 40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. | Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. | 0.999 |
fau | nop10 | ENSAOCP00000006577 | ENSAOCP00000027889 | 40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. | NOP10 ribonucleoprotein homolog (yeast). | 0.775 |
fau | nop56 | ENSAOCP00000006577 | ENSAOCP00000004021 | 40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. | Uncharacterized protein. | 0.931 |
fau | nop58 | ENSAOCP00000006577 | ENSAOCP00000011453 | 40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. | NOP58 ribonucleoprotein homolog (yeast). | 0.915 |
fbl | dkc1 | ENSAOCP00000022998 | ENSAOCP00000009068 | Fibrillarin. | Dyskeratosis congenita 1, dyskerin. | 0.998 |
fbl | fau | ENSAOCP00000022998 | ENSAOCP00000006577 | Fibrillarin. | 40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. | 0.910 |
fbl | gar1 | ENSAOCP00000022998 | ENSAOCP00000016080 | Fibrillarin. | H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. | 0.985 |
fbl | mrto4 | ENSAOCP00000022998 | ENSAOCP00000003216 | Fibrillarin. | Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. | 0.899 |
fbl | nhp2 | ENSAOCP00000022998 | ENSAOCP00000011932 | Fibrillarin. | Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. | 0.997 |
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