LOC111575089 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111575089

Uncharacterized protein. (285 aa)

Predicted Functional Partners:

dcp1a

0.744

dcp1b

0.582

klhl24

0.533

tmem35a

0.424

LOC111568362

0.414

supt4h1

0.412

fcf1

0.402

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111568362	LOC111575089	ENSAOCP00000021836	ENSAOCP00000013813	Sorting nexin 24.	Uncharacterized protein.	0.414
LOC111575089	LOC111568362	ENSAOCP00000013813	ENSAOCP00000021836	Uncharacterized protein.	Sorting nexin 24.	0.414
LOC111575089	dcp1a	ENSAOCP00000013813	ENSAOCP00000030312	Uncharacterized protein.	Decapping mRNA 1A.	0.744
LOC111575089	dcp1b	ENSAOCP00000013813	ENSAOCP00000032101	Uncharacterized protein.	Decapping mRNA 1B.	0.582
LOC111575089	fcf1	ENSAOCP00000013813	ENSAOCP00000000856	Uncharacterized protein.	FCF1 rRNA-processing protein.	0.402
LOC111575089	klhl24	ENSAOCP00000013813	ENSAOCP00000000207	Uncharacterized protein.	Kelch-like family member 24a.	0.533
LOC111575089	supt4h1	ENSAOCP00000013813	ENSAOCP00000031013	Uncharacterized protein.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.412
LOC111575089	tmem35a	ENSAOCP00000013813	ENSAOCP00000032152	Uncharacterized protein.	Transmembrane protein 35.	0.424
dcp1a	LOC111575089	ENSAOCP00000030312	ENSAOCP00000013813	Decapping mRNA 1A.	Uncharacterized protein.	0.744
dcp1a	dcp1b	ENSAOCP00000030312	ENSAOCP00000032101	Decapping mRNA 1A.	Decapping mRNA 1B.	0.994
dcp1b	LOC111575089	ENSAOCP00000032101	ENSAOCP00000013813	Decapping mRNA 1B.	Uncharacterized protein.	0.582
dcp1b	dcp1a	ENSAOCP00000032101	ENSAOCP00000030312	Decapping mRNA 1B.	Decapping mRNA 1A.	0.994
fcf1	LOC111575089	ENSAOCP00000000856	ENSAOCP00000013813	FCF1 rRNA-processing protein.	Uncharacterized protein.	0.402
klhl24	LOC111575089	ENSAOCP00000000207	ENSAOCP00000013813	Kelch-like family member 24a.	Uncharacterized protein.	0.533
supt4h1	LOC111575089	ENSAOCP00000031013	ENSAOCP00000013813	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	Uncharacterized protein.	0.412
tmem35a	LOC111575089	ENSAOCP00000032152	ENSAOCP00000013813	Transmembrane protein 35.	Uncharacterized protein.	0.424