STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111562929Nuclear receptor subfamily 1, group d, member 1. (495 aa)    
Predicted Functional Partners:
ncor2
Nuclear receptor corepressor 2.
    
 0.941
ncor1
Nuclear receptor corepressor 1.
    
 0.941
LOC111577986
Uncharacterized protein.
    
 0.790
LOC111587085
Uncharacterized protein.
    
 0.790
HDAC3
Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
    
 0.745
LOC111581226
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
      
 0.692
LOC111568327
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
      
 0.692
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
      
 0.692
aldh3b1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
      
 0.692
gad1
Glutamate decarboxylase 1a.
      
 0.692
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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