STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111576883Uncharacterized protein. (243 aa)    
Predicted Functional Partners:
ENSAOCP00000025459
PDZ domain-containing protein.
 
      0.877
LOC111585659
LIM domain binding 3b.
 
      0.749
ret
Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands.
    
 0.536
vcl
Vinculin b.
   
 0.529
LOC111581406
Vinculin a.
   
 0.529
parva
Parvin, alpha a.
   
 0.521
parvb
Parvin, beta.
   
 0.521
parvg
Parvin, gamma.
   
 0.521
ENSAOCP00000005690
Focal_AT domain-containing protein.
    
 0.489
ENSAOCP00000005713
B41 domain-containing protein.
    
 0.489
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.