STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syt11Synaptotagmin XIb. (466 aa)    
Predicted Functional Partners:
VAMP3
Vesicle associated membrane protein 3.
    
 0.739
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
     
 0.682
LOC111572069
Synaptotagmin IIa.
   
0.677
LOC111570883
Synaptotagmin Ia.
   
0.677
LOC111584615
Synaptotagmin Vb.
   
0.677
LOC111571933
Synaptotagmin Ib.
   
0.677
SYT2
Synaptotagmin 2.
   
0.677
ENSAOCP00000027312
Vesicle-associated membrane protein 8 (endobrevin).
    
 0.620
LOC111579406
AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...]
    
 0.610
vamp4
Vesicle-associated membrane protein 4.
    
 0.604
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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