STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aggf1Angiogenic factor with G patch and FHA domains 1. (749 aa)    
Predicted Functional Partners:
ddx10
RNA helicase.
    
 0.628
utp6
UTP6 small subunit processome component.
   
 
 0.599
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
      
 0.589
ankrd40
Ankyrin repeat domain 40.
      
 0.584
ddx18
RNA helicase.
    
 0.579
utp3
UTP3 small subunit processome component.
   
   0.579
LOC111573585
DEAH (Asp-Glu-Ala-His) box helicase 15.
    
 0.577
LOC111578633
DEAH (Asp-Glu-Ala-His) box polypeptide 32b.
    
 0.577
LOC111578506
DEAQ box RNA-dependent ATPase 1.
    
 0.577
dhx32
DEAH (Asp-Glu-Ala-His) box polypeptide 32a.
    
 0.577
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.