STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UbcUbiquitin-like domain-containing protein. (107 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
  
 
0.996
LOC111572078
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.995
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 0.987
ubxn7
UBX domain protein 7.
    
 0.978
pink1
PTEN induced kinase 1.
    
 0.971
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
  
0.947
LOC111566873
Ubiquitin A-52 residue ribosomal protein fusion product 1.
  
0.947
trip12
Thyroid hormone receptor interactor 12.
   
 0.945
nbr1
NBR1 autophagy cargo receptor a.
   
 0.938
traf7
TNF receptor-associated factor 7.
    
 0.905
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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