STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111570502TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor. (804 aa)    
Predicted Functional Partners:
taf6
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.953
taf2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.953
taf7
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.953
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.953
taf11
TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.953
LOC111577651
Transcription initiation factor TFIID subunit.
    
 0.952
LOC111588916
TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor.
  
  
 
0.939
taf13
TATA-box binding protein associated factor 13.
    
 0.929
LOC111586237
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.929
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.929
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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