STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100693715DEF6 guanine nucleotide exchange factor c. (634 aa)    
Predicted Functional Partners:
LOC100701740
Macrophage stimulating 1 receptor a.
   
  0.612
mst1r
Macrophage stimulating 1 receptor b.
   
  0.612
met
MET proto-oncogene, receptor tyrosine kinase.
   
  0.612
I3J5Q5_ORENI
RAS protein activator like 3.
    
 0.443
I3JPR2_ORENI
Synaptic Ras GTPase activating protein 1b.
    
 0.443
dab2ip
DAB2 interacting protein b.
    
 0.443
rasa1
RAS p21 protein activator (GTPase activating protein) 1a.
    
 0.443
I3IUV1_ORENI
RAS protein activator like 2.
    
 0.443
I3J3N8_ORENI
Uncharacterized protein.
    
 0.443
I3IWR5_ORENI
Uncharacterized protein.
    
 0.443
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.