STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100703662Host cell factor C1b. (1753 aa)    
Predicted Functional Partners:
ogt
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.
   
 0.931
I3KWS6_ORENI
Host cell factor C1a.
  
  
 
0.901
hcfc2
Host cell factor C2.
     
 
0.900
bap1
Ubiquitin carboxyl-terminal hydrolase.
    
 0.859
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.836
mcrs1
Microspherule protein 1.
    
 0.811
wdr5
WD repeat domain 5.
   
 0.810
wsb1
WD repeat and SOCS box containing 1.
   
 0.810
rbbp5
Retinoblastoma binding protein 5.
    
 0.786
LOC100692647
SET domain containing 1B, histone lysine methyltransferase a.
   
 0.740
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.