STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100710705Fibrinogen C-terminal domain-containing protein. (452 aa)    
Predicted Functional Partners:
PTX3
Pentraxin-related protein PTX3.
    
 
 0.714
ENSONIP00000027305
annotation not available
 
   
  0.711
lysmd3
LysM, putative peptidoglycan-binding, domain containing 3.
      
 0.687
ENSONIP00000079948
Uncharacterized protein LOC109194435 isoform X1.
    
  0.618
ski
V-ski avian sarcoma viral oncogene homolog a.
   
  
 0.549
LOC100706507
Laminin, beta 2-like.
    
 
 0.519
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.492
LOC100707936
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
  0.490
mcrs1
Microspherule protein 1.
    
 0.466
PTK7
Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.442
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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