Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmub2Transmembrane and ubiquitin-like domain containing 2. (338 aa)    
Predicted Functional Partners:
tmub1
Transmembrane and ubiquitin-like domain containing 1.
    
   0.918
Tmem259
Transmembrane protein 259.
    
 
 0.850
LOC100709255
ER lipid raft associated 2.
    
 
 0.784
LOC100692599
ER lipid raft associated 1.
    
 
 0.784
LOC100709059
Ring finger protein 170.
    
 
 0.715
lg6h6orf120
Zgc:77929.
      
 0.698
tmem53
Transmembrane protein 53.
   
  
 0.641
gemin4
Gem (nuclear organelle) associated protein 4.
      
 0.634
dnajc14
DnaJ (Hsp40) homolog, subfamily C, member 14.
   
  
 0.623
prpf38a
Pre-mRNA processing factor 38A.
      
 0.622
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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