STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100705541CXXC finger protein 1a. (622 aa)    
Predicted Functional Partners:
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
   
 0.954
rbbp5
Retinoblastoma binding protein 5.
    
 0.950
LOC100692647
SET domain containing 1B, histone lysine methyltransferase a.
   
 0.908
setd1a
[histone H3]-lysine4 N-trimethyltransferase SETD1.
   
 0.908
twf2
WD repeat domain 82.
   
 0.883
LOC100709494
Twinfilin actin-binding protein 2b.
   
 0.883
wdr5
WD repeat domain 5.
   
 
 0.722
wsb1
WD repeat and SOCS box containing 1.
   
 
 0.671
poc1b
POC1 centriolar protein B.
   
 
 0.670
POC1A
POC1 centriolar protein A.
   
 
 0.670
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.