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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (778 aa)    
Predicted Functional Partners:
snrnp35
Small nuclear ribonucleoprotein 35 (U11/U12).
   
 
 0.912
Zmat5
Zinc finger, matrin-type 5.
   
 
 0.893
Snrpa1
Small nuclear ribonucleoprotein polypeptide A.
    
 
 0.876
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.855
LOC100711061
tRNA selenocysteine 1 associated protein 1b.
   
 
 0.814
I3JAP8_ORENI
tRNA selenocysteine 1 associated protein 1a.
   
 
 0.814
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 
 0.790
Snrpf
Small nuclear ribonucleoprotein F.
   
 
 0.783
NCBP1
Nuclear cap binding protein subunit 1.
    
 
 0.782
pnisr
PNN-interacting serine/arginine-rich protein.
   
  
 0.764
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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