Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (778 aa)    
Predicted Functional Partners:
Snrpf
Small nuclear ribonucleoprotein F.
    
 0.872
LOC100711061
tRNA selenocysteine 1 associated protein 1b.
   
 
 0.848
I3JAP8_ORENI
tRNA selenocysteine 1 associated protein 1a.
   
 
 0.848
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.844
snrnp35
Small nuclear ribonucleoprotein 35 (U11/U12).
   
 
 0.840
luc7l
LUC7-like (S. cerevisiae).
   
 0.834
LOC100697878
Zgc:158803.
   
 0.834
luc7l3
LUC7-like 3 pre-mRNA splicing factor.
   
 0.814
Zmat5
Zinc finger, matrin-type 5.
   
 
 0.799
pnisr
PNN-interacting serine/arginine-rich protein.
   
  
 0.798
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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