Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sdccag8Serologically defined colon cancer antigen 8. (706 aa)    
Predicted Functional Partners:
ENSONIP00000046114
Male-enhanced antigen 1.
      
 0.754
LOC100711605
Malate synthase-like.
   
 
 0.732
LOC100697269
Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2.
   
 0.716
ccdc138
Uncharacterized protein.
    
 
 0.714
daw1
WD_REPEATS_REGION domain-containing protein.
      
 0.706
cep290
Centrosomal protein 290.
      
 0.673
cep164
WW domain-containing protein.
   
 0.664
bbs12
Bardet-Biedl syndrome 12.
      
 0.645
bbs1
Bardet-Biedl syndrome 1.
   
 
 0.631
dnah7
Dynein, axonemal, heavy chain 7.
    
 
 0.615
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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