STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100696250Leucine rich repeat and fibronectin type III domain containing 5b. (800 aa)    
Predicted Functional Partners:
pnn
Pinin, desmosome associated protein.
      
 0.576
zglp1
GATA-type zinc finger protein 1 isoform X1.
    
 
 0.490
fbxo33
F-box protein 33.
      
 0.489
LOC100711078
Uncharacterized protein.
   
 0.468
MDGA2
MAM domain containing glycosylphosphatidylinositol anchor 2.
   
 0.468
LOC100704500
Trafficking protein particle complex 6b-like.
   
  
 0.465
LOC100707247
Uncharacterized protein.
   
  
 0.465
nudc
NudC nuclear distribution protein.
      
 0.464
ccdc32
Coiled-coil domain containing 32.
      
 0.458
ntng1
Netrin g1a.
    
  0.453
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.