STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snap23Synaptosomal-associated protein; Belongs to the SNAP-25 family. (237 aa)    
Predicted Functional Partners:
VAMP3
Vesicle associated membrane protein 3.
   
 0.984
vamp4
Vesicle-associated membrane protein 4.
   
 0.980
LOC100691194
Vesicle-associated membrane protein 8.
   
 0.945
stx2
Syntaxin 2b; Belongs to the syntaxin family.
   
 0.943
LOC100701140
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
   
 0.943
LOC100707847
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
   
 0.943
I3JS68_ORENI
Syntaxin 1B; Belongs to the syntaxin family.
   
 0.943
LOC100701832
Syntaxin 4; Belongs to the syntaxin family.
   
 0.939
LOC100706230
Vesicle-associated membrane protein 1.
   
 0.937
ENSONIP00000050976
Vesicle-associated membrane protein 2.
   
 0.937
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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