STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAMP5Lysosomal associated membrane protein family member 5. (265 aa)    
Predicted Functional Partners:
nprl2
NPR2 like, GATOR1 complex subunit.
    
 
 0.561
Sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 
 0.560
rptor
Regulatory associated protein of MTOR, complex 1.
    
 
 0.558
rorb
RAR-related orphan receptor B.
      
 0.549
Nprl3
NPR3-like, GATOR1 complex subunit.
    
 
 0.533
wdr24
WD repeat domain 24.
    
 
 0.527
wdr59
WD repeat domain 59.
    
 
 0.516
depdc5
DEP domain containing 5.
    
 
 0.516
Mios
Missing oocyte, meiosis regulator, homolog (Drosophila).
    
   0.509
SZT2
SZT2 subunit of KICSTOR complex.
    
   0.509
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.