Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ttbk2Tau tubulin kinase 2a. (799 aa)    
Predicted Functional Partners:
Ltv1
LTV1 ribosome biogenesis factor.
    
 0.768
riok2
RIO kinase 2 (yeast).
   
 0.760
cep164
WW domain-containing protein.
    
 0.758
bysl
Bystin-like.
    
 0.754
tsr1
TSR1 ribosome maturation factor.
    
 0.749
nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 0.706
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.670
csnk1a1
Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.
   
 0.647
cep83
Centrosomal protein 83.
    
 0.639
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.625
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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