fgfrl1 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

fgfrl1

Fibroblast growth factor receptor like 1a. (494 aa)

Predicted Functional Partners:

LOC100691488

0.835

grb2

0.805

fgf23

0.771

I3KNU7_ORENI

0.755

fgf20a

0.714

fgf20b

0.714

fgf5

0.702

LOC100707945

0.697

fgf4

0.697

fgf17

0.692

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3KNU7_ORENI	LOC100691488	ENSONIP00000050554	ENSONIP00000016574	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.962
I3KNU7_ORENI	LOC100707945	ENSONIP00000050554	ENSONIP00000022026	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.564
I3KNU7_ORENI	fgf17	ENSONIP00000050554	ENSONIP00000048092	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.825
I3KNU7_ORENI	fgf20a	ENSONIP00000050554	ENSONIP00000020454	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.565
I3KNU7_ORENI	fgf20b	ENSONIP00000050554	ENSONIP00000022196	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.565
I3KNU7_ORENI	fgf23	ENSONIP00000050554	ENSONIP00000000020	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor 23; Belongs to the heparin-binding growth factors family.	0.772
I3KNU7_ORENI	fgf4	ENSONIP00000050554	ENSONIP00000022794	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.650
I3KNU7_ORENI	fgf5	ENSONIP00000050554	ENSONIP00000043638	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.627
I3KNU7_ORENI	fgfrl1	ENSONIP00000050554	ENSONIP00000001315	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor receptor like 1a.	0.755
I3KNU7_ORENI	grb2	ENSONIP00000050554	ENSONIP00000064237	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Growth factor receptor-bound protein 2b.	0.669
LOC100691488	I3KNU7_ORENI	ENSONIP00000016574	ENSONIP00000050554	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.962
LOC100691488	LOC100707945	ENSONIP00000016574	ENSONIP00000022026	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.747
LOC100691488	fgf17	ENSONIP00000016574	ENSONIP00000048092	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.863
LOC100691488	fgf20a	ENSONIP00000016574	ENSONIP00000020454	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.523
LOC100691488	fgf20b	ENSONIP00000016574	ENSONIP00000022196	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.523
LOC100691488	fgf23	ENSONIP00000016574	ENSONIP00000000020	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor 23; Belongs to the heparin-binding growth factors family.	0.871
LOC100691488	fgf4	ENSONIP00000016574	ENSONIP00000022794	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.789
LOC100691488	fgf5	ENSONIP00000016574	ENSONIP00000043638	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.800
LOC100691488	fgfrl1	ENSONIP00000016574	ENSONIP00000001315	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor receptor like 1a.	0.835
LOC100691488	grb2	ENSONIP00000016574	ENSONIP00000064237	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Growth factor receptor-bound protein 2b.	0.638