STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc85cCoiled-coil domain containing 85C, b. (406 aa)    
Predicted Functional Partners:
LOC100704324
Isthmin 2b.
      
 0.713
ccnk
Cyclin K; Belongs to the cyclin family.
      
 0.702
dtwd1
DTW domain containing 1.
      
 0.697
yap1
Yes-associated protein 1.
    
   0.677
mphosph10
U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.
      
 0.650
LOC100711132
Nucleolar protein interacting with the FHA domain of MKI67.
      
 0.636
LOC100701393
Aspartyl/asparaginyl beta-hydroxylase.
      
 0.623
ebna1bp2
EBNA1 binding protein 2.
      
 0.623
PPP1CB
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 
 0.619
LOC100692170
Serine/threonine-protein phosphatase PP1-beta catalytic subunit isoform X1.
    
 
 0.619
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.