STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc25Tetratricopeptide repeat domain 25. (524 aa)    
Predicted Functional Partners:
armc4
Armadillo repeat containing 4.
  
 
 0.881
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.839
LOC100690350
Coiled-coil domain containing 114.
   
 
 0.818
ccdc151
Uncharacterized protein.
   
 0.810
I3J1N4_ORENI
EF-hand calcium binding domain 1.
   
 0.808
I3KAM4_ORENI
Armadillo repeat containing 3.
   
 
 0.736
tekt4
Tektin 4.
   
 
 0.727
tekt3
Tektin 3.
   
 
 0.692
cfap45
Cilia and flagella associated protein 45.
   
 
 0.681
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
   
 0.670
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.