STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100704324Isthmin 2b. (463 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
   
 0.923
ENSONIP00000050375
annotation not available
      
 0.899
Kdsr
3-ketodihydrosphingosine reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.797
sptssa
Serine palmitoyltransferase small subunit A.
    
 0.776
ccdc85c
Coiled-coil domain containing 85C, b.
      
 0.713
Dhps
Deoxyhypusine synthase.
   
  
 0.703
ccnk
Cyclin K; Belongs to the cyclin family.
      
 0.698
sord
Sorbitol dehydrogenase.
  
 
 0.688
tasp1
Taspase, threonine aspartase, 1.
      
 0.674
eprs1
Glutamyl-prolyl-tRNA synthetase.
  
 0.637
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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