Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC100701291Uncharacterized protein; Belongs to the RNase T2 family. (324 aa)    
Predicted Functional Partners:
ENSONIP00000061438
annotation not available
      
 0.638
ssbp1
Single-stranded DNA binding protein 1.
      
 0.629
LOC100706520
PWP2 small subunit processome component.
     
  0.603
cmtr2
Cap methyltransferase 2.
      
 0.492
acaa2
Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.
      
 0.492
LOC100694868
FGFR1 oncogene partner.
      
 0.489
ENSONIP00000052378
Beta-microseminoprotein-like.
      
 0.450
UBL5
Ubiquitin like 5.
   
  
 0.439
pdia5
Protein disulfide isomerase family A, member 5.
    
 0.435
sord
Sorbitol dehydrogenase.
   
  
 0.430
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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