Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mtrf1lMitochondrial translational release factor 1-like. (431 aa)    
Predicted Functional Partners:
hemk1
HemK methyltransferase family member 1.
  
 
 0.883
LOC100703880
F-box and WD repeat domain containing 11a.
    
 0.876
cul1
Cullin 1b; Belongs to the cullin family.
    
  0.835
MRPL58
Mitochondrial ribosomal protein L58.
   
 0.829
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
  
 
 0.826
mrps11
Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.
 
 0.797
mrrf
Mitochondrial ribosome recycling factor.
  
 
 0.783
pum1
Pumilio RNA-binding family member 1.
    
 
 0.762
ndufaf7
Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).
   
  
 0.761
etfbkmt
Electron transfer flavoprotein subunit beta lysine methyltransferase.
      
 0.754
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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