Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100696521Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a. (636 aa)    
Predicted Functional Partners:
traf7
TNF receptor-associated factor 7.
    
 0.818
LOC100708479
Uncharacterized protein.
    
 0.801
wdr90
WD repeat domain 90.
    
  0.763
ENSONIP00000018453
Hemicentin-2-like isoform X1.
    
  0.761
ENSONIP00000035128
annotation not available
    
  0.761
ENSONIP00000036497
annotation not available
    
  0.761
LOC106097754
Uncharacterized protein LOC106097754 isoform X1.
    
  0.761
ENSONIP00000053297
Vascular cell adhesion protein 1-like.
    
  0.761
ENSONIP00000060577
annotation not available
    
  0.761
LOC102077255
Ig-like domain-containing protein.
    
  0.761
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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