Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
LOC100702978Src homology 2 domain containing transforming protein D, a. (406 aa)    
Predicted Functional Partners:
cwc25
CWC25 spliceosome associated protein homolog.
   
 0.984
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 0.943
Cwc22
MI domain-containing protein.
   
 0.940
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.940
gpatch1
G patch domain containing 1.
    
 0.895
WDR25
WD repeat domain 25.
   
 0.874
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.874
xab2
XPA binding protein 2.
    
 
 0.870
I3IUQ0_ORENI
ISY1 splicing factor homolog.
    
 
 0.867
plrg1
Pleiotropic regulator 1.
    
 
 0.865
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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