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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100702978Src homology 2 domain containing transforming protein D, a. (406 aa)    
Predicted Functional Partners:
cwc25
CWC25 spliceosome associated protein homolog.
   
 0.991
Cwc22
MI domain-containing protein.
    
 0.968
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 0.966
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.964
WDR25
WD repeat domain 25.
    
 0.928
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.928
xab2
XPA binding protein 2.
    
 
 0.917
plrg1
Pleiotropic regulator 1.
    
 
 0.917
cwc15
CWC15 spliceosome associated protein homolog.
    
 
 0.911
I3IUQ0_ORENI
ISY1 splicing factor homolog.
    
 
 0.909
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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