STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctsoCathepsin O; Belongs to the peptidase C1 family. (368 aa)    
Predicted Functional Partners:
psma1
Proteasome subunit alpha type.
      
 0.704
bcl2l1
BCL2 like 1.
     
 0.652
I3KLB2_ORENI
Uncharacterized protein.
     
 0.652
LOC100700270
BH4_2 domain-containing protein.
     
 0.652
LOC100709346
Baculoviral IAP repeat containing 5b.
     
 0.651
LOC100709661
Baculoviral IAP repeat containing 5a.
     
 0.651
LOC100705328
Baculoviral IAP repeat containing 2.
     
 0.651
lgmn
Legumain.
   
 
 0.640
mmp19
Matrix metallopeptidase 19.
   
 
 0.627
tdo2
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
 
 
  
 0.590
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.