STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100691440BRMS1 like transcriptional repressor b. (324 aa)    
Predicted Functional Partners:
sap30l
Sap30-like.
   
 0.969
LOC100694309
SIN3-HDAC complex associated factor.
    
 
 0.957
ing1
Inhibitor of growth protein.
    
 
 0.918
mxd1
MAX dimerization protein 1.
    
   0.902
I3JV04_ORENI
Translocase of outer mitochondrial membrane 20.
   
 0.895
arid4a
AT rich interactive domain 4A (RBP1-like).
   
 0.895
LOC100706337
WD_REPEATS_REGION domain-containing protein.
    
 0.856
LOC100711479
Retinoblastoma binding protein 4.
    
 0.856
LOC100695351
Retinoblastoma binding protein 4, like.
    
 0.856
suds3
SDS3 homolog, SIN3A corepressor complex component.
    
 0.805
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.