STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neil3Nei-like DNA glycosylase 3. (581 aa)    
Predicted Functional Partners:
LOC100703866
Nei-like DNA glycosylase 1.
     
 0.957
ENSONIP00000079328
annotation not available
     
 0.957
traip
TRAF-interacting protein.
   
  
 0.827
coasy
CoA synthase.
  
  
 0.761
fanci
FA complementation group I.
   
  
 0.758
MUTYH
Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.
  
  
 0.751
fancd2
FA complementation group D2.
   
  
 0.732
xrcc1
X-ray repair complementing defective repair in Chinese hamster cells 1.
      
 0.731
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
     
 0.714
Mlh3
MutL homolog 3 (E. coli).
     
 0.713
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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