LOC100691708 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100691708

Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (305 aa)

Predicted Functional Partners:

skp1

0.994

LOC100692869

0.988

ikbkb

0.988

rela

0.979

LOC100698148

0.960

cul1

0.947

LOC100703880

0.935

rps27a

0.931

ikbkg

0.928

nfkbie

0.917

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100691708	LOC100692869	ENSONIP00000001490	ENSONIP00000012096	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.988
LOC100691708	LOC100698148	ENSONIP00000001490	ENSONIP00000022863	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Protein kinase domain-containing protein.	0.960
LOC100691708	LOC100703880	ENSONIP00000001490	ENSONIP00000006230	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	F-box and WD repeat domain containing 11a.	0.935
LOC100691708	cul1	ENSONIP00000001490	ENSONIP00000039419	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Cullin 1b; Belongs to the cullin family.	0.947
LOC100691708	ikbkb	ENSONIP00000001490	ENSONIP00000051922	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.988
LOC100691708	ikbkg	ENSONIP00000001490	ENSONIP00000060250	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.928
LOC100691708	nfkbie	ENSONIP00000001490	ENSONIP00000007485	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon.	0.917
LOC100691708	rela	ENSONIP00000001490	ENSONIP00000028680	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	V-rel avian reticuloendotheliosis viral oncogene homolog A.	0.979
LOC100691708	rps27a	ENSONIP00000001490	ENSONIP00000020250	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Ribosomal protein S27a.	0.931
LOC100691708	skp1	ENSONIP00000001490	ENSONIP00000021777	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.994
LOC100692869	LOC100691708	ENSONIP00000012096	ENSONIP00000001490	Component of inhibitor of nuclear factor kappa B kinase complex.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.988
LOC100692869	LOC100698148	ENSONIP00000012096	ENSONIP00000022863	Component of inhibitor of nuclear factor kappa B kinase complex.	Protein kinase domain-containing protein.	0.943
LOC100692869	LOC100703880	ENSONIP00000012096	ENSONIP00000006230	Component of inhibitor of nuclear factor kappa B kinase complex.	F-box and WD repeat domain containing 11a.	0.664
LOC100692869	cul1	ENSONIP00000012096	ENSONIP00000039419	Component of inhibitor of nuclear factor kappa B kinase complex.	Cullin 1b; Belongs to the cullin family.	0.609
LOC100692869	ikbkb	ENSONIP00000012096	ENSONIP00000051922	Component of inhibitor of nuclear factor kappa B kinase complex.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.904
LOC100692869	ikbkg	ENSONIP00000012096	ENSONIP00000060250	Component of inhibitor of nuclear factor kappa B kinase complex.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.978
LOC100692869	nfkbie	ENSONIP00000012096	ENSONIP00000007485	Component of inhibitor of nuclear factor kappa B kinase complex.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon.	0.964
LOC100692869	rela	ENSONIP00000012096	ENSONIP00000028680	Component of inhibitor of nuclear factor kappa B kinase complex.	V-rel avian reticuloendotheliosis viral oncogene homolog A.	0.662
LOC100692869	rps27a	ENSONIP00000012096	ENSONIP00000020250	Component of inhibitor of nuclear factor kappa B kinase complex.	Ribosomal protein S27a.	0.648
LOC100692869	skp1	ENSONIP00000012096	ENSONIP00000021777	Component of inhibitor of nuclear factor kappa B kinase complex.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.588