STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109194170Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (257 aa)    
Predicted Functional Partners:
il1rap
Uncharacterized protein.
      
 0.488
LOC100704093
Leucine rich repeat containing 4C, genome duplicate b.
   
 
 0.481
egf
Epidermal growth factor.
    
 0.456
I3KYZ4_ORENI
LRRCT domain-containing protein.
     
 0.455
I3KHI6_ORENI
Regulator of cell cycle.
      
 0.433
LOC100699683
Syndecan-2.
    
 0.427
LOC100698344
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
   
  
 0.425
LOC100692465
Fibroblast growth factor receptor.
    
 0.420
fgfr3
Fibroblast growth factor receptor.
    
 0.420
LOC100701892
Leucine rich repeat containing 4C, genome duplicate a.
   
 
 0.405
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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