Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC100705405RAB GTPase activating protein 1-like 2. (353 aa)    
Predicted Functional Partners:
I3KUQ0_ORENI
Uncharacterized protein.
    
 
 0.693
pxdc1
PX domain containing 1b.
    
   0.581
RAB41
RAB41, member RAS oncogene family.
    
 0.548
rab6a
RAB6A, member RAS oncogene family.
    
 0.548
I3KT57_ORENI
RAB6B, member RAS oncogene family a.
    
 0.548
LOC100708038
Ras-related protein Rab-6B.
    
 0.548
bbs9
Bardet-Biedl syndrome 9.
      
 0.521
LOC100696366
Uncharacterized protein.
    
 0.516
LOC100695098
ZRAB1B, member RAS oncogene family a.
    
 0.516
ENSONIP00000073858
Ras-related protein ORAB-1.
    
 0.516
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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