STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100705930Outer dense fiber of sperm tails 3-like 2a. (256 aa)    
Predicted Functional Partners:
ENSONIP00000053953
Ankyrin repeat domain 24.
    
 
 0.771
LOC100710391
Cytokine receptor-like factor 1a.
 
    
 0.755
yju2
YJU2 splicing factor homolog.
      
 0.751
pacrg
PARK2 co-regulated.
   
 
 0.726
Mns1
Meiosis-specific nuclear structural 1.
    
 
 0.669
wdr90
WD repeat domain 90.
    
 
 0.658
tex43
Uncharacterized protein.
    
 
 0.652
efhb
Uncharacterized protein.
   
   0.640
ENSONIP00000056453
annotation not available
   
   0.624
LOC100708955
Sperm-associated antigen 8 isoform X4.
   
 
 0.623
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.