STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100695903Left-right determination factor. (418 aa)    
Predicted Functional Partners:
LOC100711374
Nodal-related 1.
  
 
 0.978
LOC100702473
Southpaw.
  
 
 0.973
nodal
Nodal-related 2.
   
 
 0.960
LOC100694653
Transforming growth factor beta; Belongs to the TGF-beta family.
     
 0.933
tgfb3
Transforming growth factor beta; Belongs to the TGF-beta family.
     
 0.923
LOC100710008
Transforming growth factor beta; Belongs to the TGF-beta family.
     
 0.922
LOC100690458
Transforming growth factor beta; Belongs to the TGF-beta family.
     
 0.921
tgfb2
Transforming growth factor beta; Belongs to the TGF-beta family.
     
 0.921
LOC102079063
Teratocarcinoma-derived growth factor 1.
    
 0.739
pitx2
Homeobox protein.
   
  
 0.710
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.