Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
hnrnpuHeterogeneous nuclear ribonucleoprotein Ub. (800 aa)    
Predicted Functional Partners:
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.984
LOC100706673
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.984
I3J012_ORENI
Heterogeneous nuclear ribonucleoprotein M.
   
 0.977
hnrnpa1
Heterogeneous nuclear ribonucleoprotein A1b.
   
 0.958
hnrnpa3
Heterogeneous nuclear ribonucleoprotein A3.
   
 0.955
rbmx
RNA binding motif protein X-linked.
   
 0.939
LOC109194311
RRM domain-containing protein.
   
 0.937
LOC100708824
RRM domain-containing protein.
   
 0.937
HNRNPH3
Heterogeneous nuclear ribonucleoprotein H3.
   
 0.901
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.899
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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