STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100689832RRM domain-containing protein. (269 aa)    
Predicted Functional Partners:
srsf7
Uncharacterized protein.
   
0.881
I3J8X5_ORENI
RRM domain-containing protein.
   
 0.872
SRSF3
Serine and arginine rich splicing factor 3b.
   
 0.872
ENSONIP00000006112
annotation not available
   
 0.812
I3JB75_ORENI
Uncharacterized protein.
   
0.812
I3K607_ORENI
Serine and arginine rich splicing factor 1a.
   
 0.812
LOC100710640
Serine and arginine rich splicing factor 2a.
  
0.808
LOC100695205
RRM domain-containing protein.
  
0.805
LOC100707309
Serine and arginine rich splicing factor 9.
   
 0.789
Srsf6
Serine/arginine-rich splicing factor 6 isoform X1.
  
 0.756
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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