LOC100710372 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

LOC100710372

Uncharacterized protein. (1310 aa)

Predicted Functional Partners:

Cntn2

0.781

LOC100699181

0.731

cntn5

0.558

cntn1

0.558

LOC100703160

0.558

LOC100696343

0.558

LOC100695819

0.558

LOC100695551

0.558

CNTN1

0.558

LOC100702624

0.558

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTN1	LOC100699181	ENSONIP00000069127	ENSONIP00000038445	Contactin 1.	Uncharacterized protein.	0.916
CNTN1	LOC100710372	ENSONIP00000069127	ENSONIP00000001628	Contactin 1.	Uncharacterized protein.	0.558
Cntn2	LOC100699181	ENSONIP00000006395	ENSONIP00000038445	Contactin 2.	Uncharacterized protein.	0.686
Cntn2	LOC100710372	ENSONIP00000006395	ENSONIP00000001628	Contactin 2.	Uncharacterized protein.	0.781
LOC100695551	LOC100699181	ENSONIP00000067633	ENSONIP00000038445	Contactin 4.	Uncharacterized protein.	0.728
LOC100695551	LOC100710372	ENSONIP00000067633	ENSONIP00000001628	Contactin 4.	Uncharacterized protein.	0.558
LOC100695819	LOC100699181	ENSONIP00000059476	ENSONIP00000038445	Uncharacterized protein.	Uncharacterized protein.	0.728
LOC100695819	LOC100710372	ENSONIP00000059476	ENSONIP00000001628	Uncharacterized protein.	Uncharacterized protein.	0.558
LOC100696343	LOC100699181	ENSONIP00000047474	ENSONIP00000038445	Contactin 3b.	Uncharacterized protein.	0.728
LOC100696343	LOC100710372	ENSONIP00000047474	ENSONIP00000001628	Contactin 3b.	Uncharacterized protein.	0.558
LOC100699181	CNTN1	ENSONIP00000038445	ENSONIP00000069127	Uncharacterized protein.	Contactin 1.	0.916
LOC100699181	Cntn2	ENSONIP00000038445	ENSONIP00000006395	Uncharacterized protein.	Contactin 2.	0.686
LOC100699181	LOC100695551	ENSONIP00000038445	ENSONIP00000067633	Uncharacterized protein.	Contactin 4.	0.728
LOC100699181	LOC100695819	ENSONIP00000038445	ENSONIP00000059476	Uncharacterized protein.	Uncharacterized protein.	0.728
LOC100699181	LOC100696343	ENSONIP00000038445	ENSONIP00000047474	Uncharacterized protein.	Contactin 3b.	0.728
LOC100699181	LOC100702624	ENSONIP00000038445	ENSONIP00000072752	Uncharacterized protein.	Contactin 3a, tandem duplicate 1.	0.728
LOC100699181	LOC100703160	ENSONIP00000038445	ENSONIP00000037279	Uncharacterized protein.	Contactin 3a, tandem duplicate 2.	0.728
LOC100699181	LOC100710372	ENSONIP00000038445	ENSONIP00000001628	Uncharacterized protein.	Uncharacterized protein.	0.731
LOC100699181	cntn1	ENSONIP00000038445	ENSONIP00000035488	Uncharacterized protein.	Contactin 1b.	0.916
LOC100699181	cntn5	ENSONIP00000038445	ENSONIP00000007231	Uncharacterized protein.	Contactin 5.	0.728